SNP Profiles of ICS 43 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	AC	GT	CT	GG	AC	CG	GG	CT	AG	AG	AA	CC
1._RUQ_144	_	_	AC	GT	CT	_	AC	CG	GG	CT	_	_	AA	_
2._ICS_43	_	_	AC	GT	CT	_	AC	_	GG	CT	_	_	AA	_
3._RUQ_144	_	_	AC	_	_	_	_	_	GG	_	AG	_	_	_
4._ICS43	_	_	AC	_	CT	GG	AC	CG	GG	_	_	AG	AA	CC
5._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
6._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
7._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
8._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
9._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
10._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
11._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
12._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
13._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
14._GC-01-051-3-06	TT	CC	AA	TT	TT	GG	AA	CC	_	CC	GG	GG	AA	CC
15._RUQ_144	AG	AC	AC	AC	AG	GG	AC	CG	GG	AG	AG	AG	AA	GG
16._ICS_43_Fld#_164_Plt#_1	AG	AC	AC	AC	AG	GG	AC	CG	GG	AG	AG	AG	AA	GG
17._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
18._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
19._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
20._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
21._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
22._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
23._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
24._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
25._ICS_43	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
26._ICS_43	_	_	AA	TT	TT	_	AA	CC	_	CC	_	_	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	TT	TT	CC	AA	CT	TT	CC	GT	AG	GT	CC	GG
1._RUQ_144	AG	CC	TT	TT	CC	AA	_	TT	_	GT	_	_	_	GG
2._ICS_43	AG	CC	TT	TT	CC	AA	_	TT	_	GT	_	_	_	GG
3._RUQ_144	_	CC	_	_	CC	AA	CT	_	CC	GT	AG	_	CC	GG
4._ICS43	_	_	_	_	CC	AA	CT	_	_	_	_	_	_	CC
5._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
6._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
7._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
8._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
9._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
10._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
11._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
12._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
13._GC-01-051-3-06	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
14._GC-01-051-3-06	_	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
15._RUQ_144	_	CC	_	AA	CC	AA	AG	AA	_	AC	AG	AC	CC	CC
16._ICS_43_Fld#_164_Plt#_1	_	CC	_	AA	CC	AA	AG	AA	_	AC	AG	AC	CC	CC
17._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
18._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
19._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
20._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
21._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
22._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
23._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
24._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
25._ICS_43	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
26._ICS_43	_	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CG	CC	AA	CT	GT	AG	AT	GT	CT	CT	CT	GG	AG	X_X
1._RUQ_144	_	CC	AA	CT	_	_	_	GT	_	_	CT	GG	AG	X_X
2._ICS_43	_	CC	AA	CT	_	_	_	GT	_	_	CT	GG	AG	X_X
3._RUQ_144	_	_	AA	_	_	_	_	GT	_	_	_	GG	_	X_X
4._ICS43	CG	CC	_	CT	_	AG	AT	_	_	CT	_	CC	_	X_X
5._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
6._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
7._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
8._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
9._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
10._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
11._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
12._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
13._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
14._GC-01-051-3-06	CC	CC	GG	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG	X_X
15._RUQ_144	_	GG	AA	AG	AC	AG	_	AA	AG	AG	AG	CC	AG	X_X
16._ICS_43_Fld#_164_Plt#_1	_	GG	AA	AG	AC	AG	_	AA	AG	AG	AG	CC	AG	X_X
17._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
18._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
19._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
20._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
21._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
22._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
23._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
24._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
25._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X
26._ICS_43	_	CC	GG	CC	_	_	_	TT	_	_	CC	CC	GG	X_X

Input profile: ICS_43 RUQ_144

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._ICS_43 RUQ_144

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_43

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

3._ICS_43 RUQ_144

identical
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._ICS_43 ICS43

90 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

5._ICS_43 GC-01-051-3-06

50 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

6._ICS_43 GC-01-051-3-06

50 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

7._ICS_43 GC-01-051-3-06

50 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

8._ICS_43 GC-01-051-3-06

50 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

9._ICS_43 GC-01-051-3-06

50 %
41 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._ICS_43 GC-01-051-3-06

50 %
41 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._ICS_43 GC-01-051-3-06

50 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._ICS_43 GC-01-051-3-06

50 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

13._ICS_43 GC-01-051-3-06

50 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._ICS_43 GC-01-051-3-06

48.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._ICS_43 RUQ_144

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._ICS_43 ICS_43_Fld#_164_Plt#_1

47.2 %
36 shared markers

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USDA-TARS, United States of America

Location: Field: 164, Tree: 1

17._ICS_43

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1306 2

Dapeng Zhang, 2016

18._ICS_43

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1306 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

19._ICS_43

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1306 2

Dapeng Zhang, 2016

20._ICS_43

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1306 4

Dapeng Zhang, 2016

21._ICS_43

45.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 12

Dapeng Zhang, 2016

22._ICS_43

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1306 14

Dapeng Zhang, 2016

23._ICS_43

45.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 15

Dapeng Zhang, 2016

24._ICS_43

45.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 8 > FP

Dapeng Zhang, 2016

25._ICS_43

45.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1306 9 > FP

Dapeng Zhang, 2016

26._ICS_43

43.2 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1306 3

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484